In silico simulation of biological network dynamics

Article Abstract:

Realistic simulation of biological networks requires stochastic simulation approaches because of the small numbers of molecules per cell. The intrinsic disparity between the sequential steps executed by a microprocessor program and the highly parallel nature of information flow within biochemical networks gave rise to the high-computational cost of stochastic simulational on conventional microprocessor-based computers.

Author: Eisenberg, David, Salwinski, Lukasz
Publisher: Nature Publishing Co.
Publication Name: Nature Biotechnology
Subject: Business
ISSN: 1087-0156
Year: 2004
Analysis, Simulation methods, Simulation, Biochemical genetics, Stochastic systems

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The minimum information required for reporting a molecular interaction experiment (MIMIx)

Article Abstract:

The minimum information required for reporting a molecular interaction experiment (MIMIx) is proposed. Adherence to the reporting guidelines have resulted in publications with enhanced clarity that are useful for the scientific community and have supported the rapid, systematic capture of molecular interaction data in public databases, thus improving the access to interaction data.

Author: Uetz, Peter, Eisenberg, David, Xenarios, Ioannis, Moore, Susan, Greenblatt, Jack, Tyers, Mike, Vidal, Marc, Armstrong, John, Superti-Furga, Giulio, Gerstein, Mark, Hermjakob, Henning, Montecchi-Palazzi, Luisa, Wojcik, Jerome, Salwinski, Lukasz, Ceol, Arnaud, Orchard, Sandra, Legrain, Pierre, Hogue, Chris, Apweiler, Rolf, Cusick, Michael E., Gavin, Anne-Claude, Mewes, Hans-Werner, Kerrien, Samuel, Oesterheld, Matthias, Stumpflen, Volker, Chatr-aryamontri, Andrew, Woollard, Peter, Salama, John J., Bader, Gary D., Bader, Joel, Fields, Stan, Mulder, Nicola, Gilson, Michael, Niepmann, Michael, Burgoon, Lyle, De Las Rivas, Javier, Prieto, Carlos, Perreau, Victoria M., Cesareni, Gianni
Publisher: Nature Publishing Co.
Publication Name: Nature Biotechnology
Subject: Business
ISSN: 1087-0156
Year: 2007
United States, Molecular dynamics

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The minimum information required for reporting a molecular interaction experiment (MIMIx)

Article Abstract:

The minimum information required for reporting a molecular interaction experiment (MIMIx) is proposed. Adherence to the reporting guidelines have resulted in publications with enhanced clarity that are useful for the scientific community and have supported the rapid, systematic capture of molecular interaction data in public databases, thus improving the access to interaction data.

Author: Eisenberg, David, Xenarios, Ioannis, Moore, Susan, Greenblatt, Jack, Armstrong, John, Superti-Furga, Giulio, Gerstein, Mark, Hermjakob, Henning, Montecchi-Palazzi, Luisa, Salwinski, Lukasz, Ceol, Arnaud, Orchard, Sandra, Hogue, Chris, Apweiler, Rolf, Gavin, Anne-Claude, Mewes, Hans-Werner, Kerrien, Samuel, Oesterheld, Matthias, Stumpflen, Volker, Woollard, Peter, Salama, John J., Bader, Joel, Fields, Stan, Mulder, Nicola, Gilson, Michael, Niepmann, Michael, Burgoon, Lyle, De Las Rivas, Javier, Prieto, Carlos, Perreau, Victoria M., Cesareni, Gianni, Chatr-Aryamontri, Andrew
Publisher: Nature Publishing Co.
Publication Name: Nature Biotechnology
Subject: Business
ISSN: 1087-0156
Year: 2007
Research and Development in the Physical, Engineering, and Life Sciences, Molecular Biology, Usage, Molecular computing, Protein-protein interactions

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Subjects list: Research, Methods
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