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Zoology and wildlife conservation

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Abstracts » Zoology and wildlife conservation

Structure of the winged-helix protein hRFX1 reveals a new mode of DNA binding

Article Abstract:

A structure of the DNA-binding domain (DBD) of human regulatory factor X1 (hRFX1) is presented, binding cooperatively to a symmetrical X-box. hRFX1 is in the winged-helix subfamily of helix-turn-helix proteins, and its uses a beta-hairpin to recognize DNA. A new model for linker histone and DNA interactions is proposed.

Author: Chen, Hua, Burley, Stephen K., Gajiwala, Ketan S., Cornille, Fabrice, Roques, Bernard P., Reith, Walter, Mach, Bernard
Publisher: Macmillan Publishing Ltd.
Publication Name: Nature
Subject: Zoology and wildlife conservation
ISSN: 0028-0836
Year: 2000

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Crystal structure of TFIID TATA-box binding protein

Article Abstract:

The molecular form of the TATA-box binding protein (TBP or TFIID-tau) has been determined using X-ray crystallography. TBP belongs to a group of multisubunit enzymes that assist in transcribing RNA polymerases in eukaryotes. TBP from the plant Arabidopsis thaliana was found to be draped around the DNA molecule, with the DNA-binding fold held in a symmetric alpha-beta structure and with the DNA-binding surface consisting of a curved, antiparallel beta-sheet. This structure probably facilitates TBP in interacting with other transcription initiation factors and proteins.

Author: Burley, Stephen K., Horikoshi, Masami, Roeder, Robert G., Nikolov, Dimitar B., Shu-Hong Hu, Lin, Judith, Gasch, Alexander, Hoffmann, Alexander, Nam-Hai Chua
Publisher: Macmillan Publishing Ltd.
Publication Name: Nature
Subject: Zoology and wildlife conservation
ISSN: 0028-0836
Year: 1992
Cover Story, Genetic aspects, Eukaryotic cells, Cells (Biology), Eukaryotes, Proteins, Genetic regulation, Genetic transcription, Transcription (Genetics), Protein structure

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Recognition by Max of its cognate DNA through a dimeric b/HLH/Z domain

Article Abstract:

Max is a b/HLH/Z protein which heter-oligomerizes with Myc oncoproteins that authorizes them to link DNA. The helix-loop-helix (HLH) transcription factors feature a highly conserved bipartite DNA-binding region. The basic /helix-loop-helix/leucine zipper (b/HLH/Z) domain of Max knotted with DNA, has been viewed with X-ray crystallography. Max binds to CACGTG by direct contact of alpha-helical basic region and major groove. The structural description and refinements of DNA-binding domain, monomer structure, parallel four-helix bundle, leucine zipper and loop are discussed.

Author: Burley, Stephen K., Ferre-D'Amare, Adrian R., Prendergast, George C., Ziff, Edward B.
Publisher: Macmillan Publishing Ltd.
Publication Name: Nature
Subject: Zoology and wildlife conservation
ISSN: 0028-0836
Year: 1993
Analysis, DNA, Carrier proteins, Transport proteins

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Subjects list: Research, DNA binding proteins
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