Tracking RNA polymerase, one step at a time

Article Abstract:

RNA polymerases (RNAPs) transcribe genetic material by selecting neculeoside triphosphate substrates according to the sequence of the DNA template. It is found that individual molecules of bacterial RNA polymerase move in single base-pair steps and concludes that RNA polymerase acts as a Brownian ratchet that is driven forward by the binding of incoming nucleoside triphosphates.

Author: Vassylyev, Dmitry G., Artsimovitch, Irina
Biological Product (except Diagnostic) Manufacturing, Drugs, Deoxyribonucleic Acid, Nucleic Acid Derivatives, DNA, Genetic research, Nucleosides

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Structural basis for substrate selection by T7 RNA polymerase.

Article Abstract:

The structure of T7 RNA polymerase (RNAP) elongation complex with the incoming substrate analog is determined to study the substrate selection mechanism in RNA polymerases. The structure suggests a novel mechanism, in which the substrates selection occurs prior to the isomerization to the catalytically active conformation.

Author: Yokoyama, Shigeyuki, Temiakov, Dmitry, Patlan, Vsevolod, Anikin, Michael, McAllister, William T., Vassylyev, Dmitry G.
Isomerization

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Allosteric modulation of the RNA polymerase catalytic reaction is an essential component of transcription control by rifamycins

Article Abstract:

The 2.5 angstrom resolution structures of rifabutin and rifapentin complexed with the Thermus thermophilus RNA polymerase (RNAP) holoenzyme are examined. The transmission of a rifamycin-induced signal over 19 angstrom to the RNAP active site is useful in slowing down catalysis.

Author: Tahirov, Tahir H., Vassylyev, Dmitry G., Artsimovitch, Irina, Vassylyeva, Marina N., Perederina, Anna, Svetlov, Vladimir, Matsugaki, Naohiro, Svetlov, Dmitri, Igarashi, NoriyukI, Wakatsuki, Soichi
Rifampin, Allosteric enzymes

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Subjects list: Research, RNA polymerases
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