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Gaining confidence in high-throughput protein interaction networks

Article Abstract:

A quantitative method to evaluate proteomics is developed and a logistic regression approach that uses statistical and topological descriptors to predict the biological relevance of protein-protein interactions obtained from high-throughput screens for yeast is presented. The analysis presented helps in analyzing the growing amount of genomic and proteomics data in model organisms and humans.

Author: Rothberg, Jonathan M., Bader, Joel S., Chaudhuri, Amitabha, Chant, John
Publisher: Nature Publishing Co.
Publication Name: Nature Biotechnology
Subject: Business
ISSN: 1087-0156
Year: 2004
Genetic research

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Closing the circle of osmoregulation

Article Abstract:

A mathematical model integrates the major components in the response to hyperosmotic shock in yeast, from the osmosensor at the membrane, to signal transduction, to gene regulation of metabolism. A description of the feedback effect of internal glycerol levels on osmotic pressure and cellular volume is included.

Author: D'haeseleer, Patrik
Publisher: Nature Publishing Co.
Publication Name: Nature Biotechnology
Subject: Business
ISSN: 1087-0156
Year: 2005
United States, All Other Basic Organic Chemical Manufacturing, CHEMICALS AND ALLIED PRODUCTS, Glycerine, Water-electrolyte balance (Physiology), Fluid-electrolyte balance, Osmoregulation, Glycerol, Structure, Glycerin

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Quantitative chemical proteomics reveals mechanisms of action of clinical ABL kinase inhibitors

Article Abstract:

A new chemical proteomic approach for studying the mechanisms of the action of clinical ABL kinase inhibitors is discussed. The method is found to be extremely useful for drug discovery.

Author: Neubauer, Gitte, Bauer, Andreas, Boesche, Markus, Rau, Christina, Bastuck, Sonja, Bouwmeester, Tewis, Drewes, Gerard, Kuster, Bernhard, Bantscheff, Marcus, Eberhard, Dirk, Abraham, Yann, Hobson, Scott, Mathieson, Toby, Perrin, Jessica, Raida, Manfred, Reader, Valerie, Sweetman, Gavain, Hopf, Carsten, Kruse, Ulrich, Ramsden, Nigel, Rick, Jens
Publisher: Nature Publishing Co.
Publication Name: Nature Biotechnology
Subject: Business
ISSN: 1087-0156
Year: 2007
Phosphotransferases

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Subjects list: Research, Genetic aspects, Protein binding, Yeast fungi, Yeasts (Fungi), Proteomics
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