Effect of orientational motion of mobile chromophores on the dynamics of Forster energy transfer in polymers

Article Abstract:

Brownian dynamics (BD) simulations are carried out to explore the effects of the orientational motion of the donor-acceptor (D-A) chromophore pair on the Forster energy transfer. It is shown that the orientational motion can change the fluorescence resonance energy transfer (FRET) rate significantly, over 40%.

Electric properties, Chromophores

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FRET by FET and dynamics of polymer folding

Article Abstract:

Brownian dynamics simulations of Fluorescence resonance energy transfer (FRET) during polymer folding are presented. The results of the study show the reliability of FRET as a dynamic marker in the folding process.

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Study of pair contact formation among hydrophobic residues in a model in a model HP-36 protein: relationship between contact order parameter and rate of folding and collapse

Article Abstract:

Pair distributions and correlations between hydrophobic residues are studied. Brownian dynamics simulations of a model protein carried this out.

Ligand binding (Biochemistry), Atomic properties, Hydrophobic effect

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