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Development of a universal microarray based on the ligation detection reaction and 16S rRNA gene polymorphism to target diversity of cyanobacteria

Article Abstract:

The development and validation of a microarray for the identification of cyanobacteria in aquatic environments is described with the help of a ligation detection reaction coupled to a universal array. The findings indicate that a high discriminative power and sensitivity to 1 fmol of the PCR-amplified 16S rRNA.

Author: Sivonen, Kaarina, Grubisic, Stana, Wilmotte, Annick, Rantala, Anne, Castiglioni, Bianca, Rizzi, Ermanno, Frosini, Andrea, Rajaniemi, Pirjo, Mugnai, Maria Angela, Ventura, Stefano, Boutte, Christophe, Balthasart, Pierre, Consolkandi, Clarissa, Bordoni, Roberta, Mezzelani, Alessandra, Battaglia, Cristina, Bellis, Gianluca De
Publisher: American Society for Microbiology
Publication Name: Applied and Environmental Microbiology
Subject: Biological sciences
ISSN: 0099-2240
Year: 2004
Goods & services distribution, Channels of Distribution, Distribution, Genetic polymorphisms, Company distribution practices

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Diversity of toxic and nontoxic Nodularia isolates (Cyanobacteria) and filaments from the Baltic Sea

Article Abstract:

Researchers show that Nodularia spumigena, N. baltica, and N. litorea are really one species based on an analysis of the 16S-23S rRNA internally transcribed spacer and the phycocyanin operon intergenic spacer. These organisms are planktic and produce a pentapeptide hepatotoxin called nodularin.

Author: Laamanen, Maria J., Gugger, Muriel F., Lehtimaki, Jaana M., Haukka, Kaisa, Sivonen, Kaarina
Publisher: American Society for Microbiology
Publication Name: Applied and Environmental Microbiology
Subject: Biological sciences
ISSN: 0099-2240
Year: 2001
Reports, Plankton research

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Quantitative real-time PCR detection of toxic Nodularia cyanobacteria in the Baltic Sea

Article Abstract:

A specific and sensitive quantitative real-time PCR (qPCR) method is developed for targeting the hepatotoxin nodularin synthetase gene subunit F (ndaF). This method is used to detect the ndaF containing genomes of nodularin-producing Nodularia cyanobacteria of the Baltic Sea.

Author: Sivonen, Kaarina, Jokela, Jouni, Rajaniemi-Wacklin, Pirjo, Lyra, Christina, Koskenniemi, Kerttu
Publisher: American Society for Microbiology
Publication Name: Applied and Environmental Microbiology
Subject: Biological sciences
ISSN: 0099-2240
Year: 2007
Genetic aspects, Polymerase chain reaction, Microbial toxins, Structure, Report

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Subjects list: Research, Cyanobacteria
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